PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022202-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 219aa    MW: 25538.1 Da    PI: 7.7634
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022202-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind89.73.7e-281597293
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
      HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93
                      Fl+k+y++++d+++++++sws ++nsf+v++++ef   +L++yFkhsnf+SFvR+Ln+YgF+k++ e+         weF+++ F + + ++
  PSME_00022202-RA 15 FLTKTYDMVDDPATNTMVSWSPSSNSFIVWNPTEFFGVLLSTYFKHSNFSSFVRKLNTYGFHKIDPER---------WEFTNEGFLRVHSHS 97
                      9********************999*****************************************999.........888888887665543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-33696IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.11E-281094IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.9E-4211104IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-251597IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-181538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-185365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEGSQNDSSN GPPPFLTKTY DMVDDPATNT MVSWSPSSNS FIVWNPTEFF GVLLSTYFKH  60
SNFSSFVRKL NTYGFHKIDP ERWEFTNEGF LRVHSHSQQL QKGESLSRGA CVEIKQLEYE  120
TEKLRQEKQG LVIELVRLKQ HQQDTEFDLQ SLEEQLQVME QRQHRMMAFL AKANPNFVAQ  180
LVQHHDKIAH IATKTRKEDC KIMMRSWRLG KMDVLVAKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-18139218108Heat shock factor protein 1
5d5u_B2e-1889219117Heat shock factor protein 1
5d5v_B2e-1889219117Heat shock factor protein 1
5d5v_D2e-1889219117Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1175891e-137BT117589.1 Picea glauca clone GQ03904_J01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276853.16e-73PREDICTED: heat shock factor protein HSF8
RefseqXP_010276854.16e-73PREDICTED: heat shock factor protein HSF8
RefseqXP_010276855.16e-73PREDICTED: heat shock factor protein HSF8
RefseqXP_010276856.16e-73PREDICTED: heat shock factor protein HSF8
RefseqXP_010276857.16e-73PREDICTED: heat shock factor protein HSF8
RefseqXP_010276858.16e-73PREDICTED: heat shock factor protein HSF8
SwissprotQ84T613e-64HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A0D2T5251e-71A0A0D2T525_G
TrEMBLU5CZX61e-71U5CZX6_AMBTC; Uncharacterized protein
STRINGVIT_02s0012g01810.t012e-69(Vitis vinifera)
STRINGGLYMA16G13400.13e-69(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.16e-64heat shock factor 1